Tutorials will be held at the CS department, Sand 6/7.
| 12:00 | Registration open |
| 13:00 | Daniel Huson (Lecture Hall 1) |
| Yu Wang (Lecture Hall 2) | |
| 15:30 | Coffee Break |
| 16:00 | Gunnar Rätsch and Cheng Soon Ong (Lecture Hall 1) |
| Hagit Shatkay (Lecture Hall 2) | |
| 18:30 | Reception (Sand 1, A104) |
Main conference venue:
Kupferbau, Hölderlinstraße
| 08:00 | Registration Open |
| 08:30 | Welcome Address (Oliver Kohlbacher) |
Session 1: Expression Analysis (chair: Andreas Zell) |
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| 08:45 | Detlef Weigel (invited speaker) |
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Genome-wide analysis of sequence variation in
Arabidopsis thaliana |
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| 09:30 | Lottaz, Toedling, Spang |
|
Annotation-based Distance Measures for
Patient Subgroup Discovery in Clinical Microarray Studies (LP, 118) |
|
| 10:00 | Rätsch, Hepp, Schulze, Ong |
|
PALMA: Perfect Alignments using Large Margin
Algorithms (LP, 178) |
|
| 10:30 | Grau, Ben-Gal, Gohr et al. |
|
Prediction of eukaryotic transcription
factor binding sites using Variable Order Markov models (SP, 139) |
|
| 10:50 | Coffee Break |
Session 2: Protein Interactions (chair: Ralf Zimmer) |
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| 11:20 | Canzar, Remy |
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Shape Distributions and Protein Similarity
(LP, 151) |
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| 11:50 | Hakenberg, Plake, Schiemann, Leser |
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Ali Baba - Accessing PubMed using graphs
(SP, 128) |
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| 12:10 | Griewel, Rarey |
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Computational Macromolecular Assembly: A
Geometric Hashing Approach (SP, 179) |
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| 12:35 | Lunch Break (Kupferbau, ground floor) |
Session 3: Sequence Analysis (chair: Kay Nieselt) |
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| 14:00 | Cedric Notredame (invited speaker) |
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Combining Sequence Information with T-Coffee |
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| 14:45 | de Carvalho, Rahmann |
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Microarray Layout as Quadratic Assignment
Problem (LP, 184) |
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| 15:15 | Halpern, Chiapello, Robin et al. |
|
Determination of the mosaic structure of
bacterial chromosomes and application to prediction of short motifs
involved in DNA repair (SP) |
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| 15:35 | Mosig, Hofacker, Stadler |
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Comparative Analysis of Cyclic Sequences:
Viroids and other Small Circular RNAs (LP, 144) |
|
| 16:05 | Coffee Break |
| Society Meetings (Location: Alte Physik) | |
| 15:00 | GBM |
| 16:00 | GI |
| 16:30 | Poster session (Kupferbau, foyer) |
Software demos (Kupferbau, lecture hall 23 and 25, dual track) |
|
| 16:30 | Stamatakis |
| Inferring Phylogenies with RAxML-VI-HPC (H25) | |
| Grau, Ben-Gal, Posch | |
| VOMBAT: A web-server for predicting transcription factor binding sites… (H23) | |
| 17:30 | Schmidt, Frishman |
| PROMPT: A Protein Mapping and Comparison Tool (H25) | |
| Bazzan | |
| ATUCG – An Agent-Based Environment for Automating Annotation (H23) | |
| 19:30 | PC Dinner (by invitation only) |
Main conference venue:
Kupferbau, Hölderlinstraße
Session 4: Protein Interactions (chair: Dietmar Schomburg) |
|
| 08:30 | Rob Russell (invited speaker) |
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Pushing details into interaction networks |
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| 09:15 | Schlicker, Huthmacher, Ramirez et al. |
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Functional evaluation of predicted
domain-domain interactions and human protein interaction networks (LP,190) |
|
| 09:45 | Futschik, Chaurasia, Wanker, Herzel |
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Comparison of Human Protein-Protein
Interaction Maps (LP,194) |
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| 10:15 | Kim, Lu, Xia, Gerstein |
|
Redefining Nodes and Edges: Relating 3D
Structures to Protein Interaction Networks Provides Insights into their
Evolution (SP,126) |
|
| 10:35 | Coffee Break |
Session 5: Protein Interactions (chair: Andrei Lupas) |
|
| 11:15 | David Jones (invited speaker) |
| Docking protein domains
using a contact map representation |
|
| 12:00 | Antes, Siu, Lengauer |
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DynaPred: A combined structure and sequence
based method for the prediction of MHC class I binding peptide
sequences and conformations (SP,141) |
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| 12:20 | Lunch Break (Kupferbau, ground floor) |
Session 6 (chair: Johannes Söding) |
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| 14:00 | Gene Myers (invited speaker) |
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Imaging-Based Systems Biology |
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| 14:45 | Hamborg, Kleffe |
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MPI-ClustDB: A fast String Matching Strategy
utilizing Parallel Computing (LP,196) |
|
| 15:15 | Presentation of GCB 2007 |
Society meetings ( Location: Alte Physik ) |
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| 15:30 | DECHEMA |
| 16:00 | Punting tour on the Neckar river |
| Guided tour of Tübingen (English/German) | |
| 19:30 | Banquet ("Die Kelter") |
Main conference venue:
Kupferbau, Hölderlinstraße
Session 7: Protein Interactions (chair: Thomas Lengauer) |
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| 08:30 | Mukund Thattai (invited speaker) |
|
Encoding evolvability: The hierarchical
language of polyketide synthase
protein interactions |
|
| 09:15 | Winter, Baust, Hoflack et al. |
|
A novel, comprehensive method to detect and
predict protein-protein interactions applied to the study of vesicular
trafficking (LP,142) |
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| 09:45 | Küffner, Duchrow, Fundel, Zimmer |
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Characterization of Protein Interactions (LP,175) |
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| 10:15 | Kottha, Schröder |
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Classifying permanent and transient protein
interactions (LP,117) |
|
| 10:45 | Coffee Break |
Session 8: Mass Spectrometry (chair: Knut Reinert) |
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| 11:15 | Pöschl, Böttcher, Clemens et al. |
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Analysis of Metabolite relations in LCMS data
using Bayesian Networks (SP,149) |
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| 11:35 | Heinonen, Rantanen, Mielikäinen et al. |
|
Ab Initio Prediction of Molecular Fragments
from Tandem Mass Spectrometry (LP,177) |
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| 12:05 | Lunch Break (Kupferbau, ground floor) |
Special Session of the DFG Centers of Excellence in Bioinformatics |
|
| 13:15 | Introductory Remarks (Dr. Nikolai Raffler, DFG) |
| 13:30 | Introductory Remarks (Dr. Fischer, MWK BW) |
| Presentations of the five DFG Centers of Excellence | |
| 13:45 | Institute for Bioinformatics at CeBiTec (Bielefeld) |
| 14:05 | Interdisziplinäres Zentrum für Bioinformatik (Leipzig) |
| 14:25 | Bioinformatik-Initiative München (München) |
| 14:45 | Coffee Break |
| 15:15 | Zentrum für Bioinformatik Saar (Saarbrücken) |
| 15:35 | Zentrum für Bioinformatik Tübingen (Tübingen) |
| 15:55 | Panel discussion w/ representatives of the centers |
| "Bioinformatics -- Quo vadis?" (chair: Knut Reinert) | |
| 16:30 | Closing remarks (Andrei Lupas) |
| End of Conference |